Package: ggoncoplot 0.1.0

ggoncoplot: Easily Create Interactive Oncoplots

Generate oncoplots from tabular mutational data. Optionally make these oncoplots interactive, with a fully customisable tooltip.

Authors:Sam El-Kamand [aut, cre]

ggoncoplot_0.1.0.tar.gz
ggoncoplot_0.1.0.zip(r-4.7-any)ggoncoplot_0.1.0.zip(r-4.6-any)ggoncoplot_0.1.0.zip(r-4.5-any)
ggoncoplot_0.1.0.tgz(r-4.6-any)ggoncoplot_0.1.0.tgz(r-4.5-any)
ggoncoplot_0.1.0.tar.gz(r-4.7-any)ggoncoplot_0.1.0.tar.gz(r-4.6-any)
ggoncoplot_0.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
ggoncoplot/json (API)

# Install 'ggoncoplot' in R:
install.packages('ggoncoplot', repos = c('https://selkamand.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/selkamand/ggoncoplot/issues

Pkgdown/docs site:https://selkamand.github.io

Datasets:

On CRAN:

Conda:

5.05 score 14 stars 5 scripts 2 exports 74 dependencies

Last updated from:92f3d87c81. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK155
source / vignettesOK197
linux-releaseOK183
macos-releaseOK141
macos-oldrelOK122
windows-develOK121
windows-releaseOK127
windows-oldrelOK126
wasm-releaseOK133

Exports:ggoncoplotggoncoplot_options

Dependencies:assertionsbase64encbslibcachemclicommonmarkcpp11curldata.tabledigestdplyrevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverforcatsfsgdtoolsgenericsggEDAggiraphggplot2ggtextgluegridtextgtablehighrhtmltoolshtmlwidgetsisobandjpegjquerylibjsonliteknitrlabelinglifecyclelitedownmagrittrmarkdownMASSmemoisemimemutationtypespatchworkpillarpkgconfigpngpurrrR6rankrappdirsRColorBrewerRcpprlangrmarkdownS7sassscalesstringistringrsystemfontstibbletidyselecttinytexutf8vctrsviridisLitewithrxfunxml2yaml

Essential Resources
Getting Started
Rendered fromessential_resources.Rmdusingknitr::rmarkdown

Last update: 2025-09-20
Started: 2025-09-18

Sorting Algorithm
How are oncoplot axes sorted? | Step 1: Identify Sort Order for Y Axis | Step 2: Identify Sort Order for X Axis | Goal: | Method:
Rendered fromsorting_algorithm.Rmdusingknitr::rmarkdown

Last update: 2024-07-08
Started: 2024-07-08

Readme and manuals

Help Manual

Help pageTopics
data.frame has colnamescheck_valid_dataframe_column
Combine margin plots with main plotcombine_plots
Get data.frame oget_nonmutated_tiles
ggoncoplotggoncoplot
Gene barplotggoncoplot_gene_barplot
ggoncoplot optionsggoncoplot_options
Plot oncoplotggoncoplot_plot
Prep data for oncoplotggoncoplot_prep_df
Identify top genes from a mutation dfidentify_topn_genes
Simulated Cancer Genome Datasetoncosim
Simulated Cancer Dataset Metadataoncosim_metadata
Make strings prettier for printingprettify
Calculate Pathway-informed Genes Rankingsrank_genes_based_on_pathways
Generate score based on genesscore_based_on_gene_rank
Oncoplot Theme: defaulttheme_oncoplot_default
Prepare dataset for plottingunify_samples